Artibeus lituratus

great fruit-eating bat

Included in the VGP and BAT1K.


metadata.yaml (view) (edit on github)
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mArtLit1 125.61 Gbp 48.74x 93.3 GiB
PacBio HiFi (.bam) mArtLit1 571.21 Gbp 221.65x 424.1 GiB
Arima mArtLit1 170.96 Gbp 66.34x 93.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.58 Gbp.
Last upload on 15 April 2024.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mArtLit1 PacBio HiFi (.fq) 125.61 Gbp 48.74x 93.3 GiB
PacBio HiFi (.bam) 571.21 Gbp 221.65x 424.1 GiB
Arima 170.96 Gbp 66.34x 93.0 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.58 Gbp.
Last upload on 15 April 2024.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 11 September 2023
mArtLit1.HiC.hap1.20230911.fasta.gz (641.9 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 193.24 Mbp 1 244.26 Mbp
20 3 180.62 Mbp 2 216.81 Mbp
30 4 122.86 Mbp 4 180.62 Mbp
40 6 101.11 Mbp 5 177.55 Mbp
50 9 70.48 Mbp 6 160.30 Mbp
60 12 60.70 Mbp 8 146.37 Mbp
70 16 52.15 Mbp 9 129.79 Mbp
80 21 39.55 Mbp 11 110.56 Mbp
90 28 22.54 Mbp 14 60.57 Mbp
100 561 10.28 Kbp 535 10.28 Kbp
1.000x 561 2.27 Gbp 535 2.27 Gbp
NG based on genome size 2.58 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 11 September 2023
mArtLit1.HiC.hap2.20230911.fasta.gz (607.2 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 2 116.16 Mbp 1 245.58 Mbp
20 4 98.51 Mbp 2 215.52 Mbp
30 7 72.71 Mbp 3 194.47 Mbp
40 10 62.55 Mbp 5 179.08 Mbp
50 13 58.23 Mbp 6 164.09 Mbp
60 17 52.29 Mbp 7 152.73 Mbp
70 22 40.72 Mbp 9 130.58 Mbp
80 28 31.05 Mbp 10 117.95 Mbp
90 37 19.40 Mbp 12 98.44 Mbp
100 375 8.62 Kbp 336 8.62 Kbp
1.000x 375 2.14 Gbp 336 2.14 Gbp
NG based on genome size 2.58 Gbp.
Individual 1 Mitochondrial Assembly
Version assembly_MT_rockefeller from 28 February 2024
mArtLit1.MT.20240228.fasta.gz (5.3 KiB)

Quality: not computed
Assembly Metadata
assembly_vgp_HiC_2.0/mArtLit1_hap1.yml (view)
assembly_vgp_HiC_2.0/mArtLit1_hap2.yml (view)
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.