Sturnira parvidens

little yellow-shouldered Mesoamerican bat

Included in the VGP and BAT1K.

- S3 File Index -- S3 Interactive Viewer -- NCBI Taxonomy Browser -


metadata.yaml (view) (edit on github)
species:
  short_name: mStuPar
  name: Sturnira parvidens
  taxon_id: 196700
  common_name: little yellow-shouldered Mesoamerican bat
  order:
    name: Chiroptera
  family:
    name: Phyllostomidae
  individuals:
    - short_name: mStuPar1
  genome_size: 2704170000
  genome_size_method: GoaT
  project: [ vgp , bat1k ]
No image
Raw Data by Technology
Datatype Individual Bases Coverage Bytes Access
PacBio HiFi (.fq) mStuPar1 18.67 Gbp 6.90x 62.7 GiB
PacBio HiFi (.bam) mStuPar1 95.06 Gbp 35.15x 319.1 GiB
Arima mStuPar1 149.32 Gbp 55.22x 83.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.70 Gbp.
Last upload on 21 November 2023.
Raw Data by Individual
Individual Datatype Bases Coverage Bytes Access
mStuPar1 PacBio HiFi (.fq) 18.67 Gbp 6.90x 62.7 GiB
PacBio HiFi (.bam) 95.06 Gbp 35.15x 319.1 GiB
Arima 149.32 Gbp 55.22x 83.9 GiB
Bases and Coverage are approximate.
Coverage based on genome size 2.70 Gbp.
Last upload on 21 November 2023.
Assemblies
Individual 1 Haplotype 1 Assembly
Version assembly_vgp_HiC_2.0 from 29 November 2023
mStuPar1.HiC.hap1.20231129.fasta.gz (617.3 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 103.36 Mbp 2 216.38 Mbp
20 6 78.67 Mbp 3 193.61 Mbp
30 9 70.31 Mbp 4 180.14 Mbp
40 15 48.48 Mbp 6 156.56 Mbp
50 22 26.39 Mbp 8 142.75 Mbp
60 34 18.87 Mbp 10 120.22 Mbp
70 51 12.48 Mbp 12 96.65 Mbp
80 271 160.72 Kbp 195 160.72 Kbp
90 0 0
100 0 0
0.815x 1098 2.20 Gbp 1021 2.20 Gbp
NG based on genome size 2.70 Gbp.
Individual 1 Haplotype 2 Assembly
Version assembly_vgp_HiC_2.0 from 29 November 2023
mStuPar1.HiC.hap2.20231129.fasta.gz (645.7 MiB)

Quality: not computed

Contigs Scaffolds
NG LG Len LG Len
10 3 105.11 Mbp 2 216.32 Mbp
20 6 84.82 Mbp 3 194.73 Mbp
30 9 77.75 Mbp 4 180.64 Mbp
40 13 59.93 Mbp 6 154.50 Mbp
50 19 35.64 Mbp 8 141.76 Mbp
60 28 24.48 Mbp 10 121.27 Mbp
70 43 14.47 Mbp 12 108.75 Mbp
80 79 2.54 Mbp 16 25.85 Mbp
90 0 0
100 0 0
0.850x 821 2.30 Gbp 750 2.30 Gbp
NG based on genome size 2.70 Gbp.
Data Use Policy

Samples and data come from a variety of sources. To support fair and productive use of this data, please abide by the Data Use Policy and contact Erich D. Jarvis, ejarvis@rockefeller.edu, with any questions.